Package: PCLassoReg 1.0.0
PCLassoReg: Group Regression Models for Risk Protein Complex Identification
Two protein complex-based group regression models (PCLasso and PCLasso2) for risk protein complex identification. PCLasso is a prognostic model that identifies risk protein complexes associated with survival. PCLasso2 is a classification model that identifies risk protein complexes associated with classes. For more information, see Wang and Liu (2021) <doi:10.1093/bib/bbab212>.
Authors:
PCLassoReg_1.0.0.tar.gz
PCLassoReg_1.0.0.zip(r-4.5)PCLassoReg_1.0.0.zip(r-4.4)PCLassoReg_1.0.0.zip(r-4.3)
PCLassoReg_1.0.0.tgz(r-4.4-any)PCLassoReg_1.0.0.tgz(r-4.3-any)
PCLassoReg_1.0.0.tar.gz(r-4.5-noble)PCLassoReg_1.0.0.tar.gz(r-4.4-noble)
PCLassoReg_1.0.0.tgz(r-4.4-emscripten)PCLassoReg_1.0.0.tgz(r-4.3-emscripten)
PCLassoReg.pdf |PCLassoReg.html✨
PCLassoReg/json (API)
| # Install 'PCLassoReg' in R: |
| install.packages('PCLassoReg', repos = c('https://weiliu123.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/weiliu123/pclassoreg/issues
- PCGroups - Protein complexes.
- classData - A dataset for classification
- survivalData - A dataset for prognostic model
Last updated 3 years agofrom:14b575cc1a. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 18 2024 |
| R-4.5-win | NOTE | Nov 18 2024 |
| R-4.5-linux | NOTE | Nov 18 2024 |
| R-4.4-win | NOTE | Nov 18 2024 |
| R-4.4-mac | NOTE | Nov 18 2024 |
| R-4.3-win | NOTE | Nov 18 2024 |
| R-4.3-mac | NOTE | Nov 18 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A dataset for classification | classData |
| Cross-validation for 'PCLasso' | cv.PCLasso |
| Cross-validation for 'PCLasso2' | cv.PCLasso2 |
| get protein complexes | getPCGroups |
| Protein complexes. | PCGroups |
| Protein complex-based group lasso-Cox model | PCLasso |
| Protein complex-based group Lasso-logistic model | PCLasso2 |
| Group Regression Models for Risk Protein Complex Identification | PCLassoReg |
| Plot the cross-validation curve from a 'cv.PCLasso' object | plot.cv.PCLasso |
| Plot the cross-validation curve from a 'cv.PCLasso2' object | plot.cv.PCLasso2 |
| Plot coefficients from a PCLasso object | plot.PCLasso |
| Plot coefficients from a PCLasso2 object | plot.PCLasso2 |
| Make predictions from a cross-validated PCLasso model | predict.cv.PCLasso |
| Make predictions from a cross-validated PCLasso2 model | predict.cv.PCLasso2 |
| Make predictions from a PCLasso model | predict.PCLasso |
| Make predictions from a PCLasso2 model | predict.PCLasso2 |
| A dataset for prognostic model | survivalData |
