1 Introduction | 1.1 PCLasso | 1.2 PCLasso2 | 2 Installation | 3 PCLassoReg | 3.1 PCLasso | 3.2 PCLasso2 | 3.3 Other penalties | 4 Reference
Package: PCLassoReg 1.0.0
PCLassoReg: Group Regression Models for Risk Protein Complex Identification
Two protein complex-based group regression models (PCLasso and PCLasso2) for risk protein complex identification. PCLasso is a prognostic model that identifies risk protein complexes associated with survival. PCLasso2 is a classification model that identifies risk protein complexes associated with classes. For more information, see Wang and Liu (2021) <doi:10.1093/bib/bbab212>.
Authors:
PCLassoReg_1.0.0.tar.gz
PCLassoReg_1.0.0.zip(r-4.7-any)PCLassoReg_1.0.0.zip(r-4.6-any)PCLassoReg_1.0.0.zip(r-4.5-any)
PCLassoReg_1.0.0.tgz(r-4.6-any)PCLassoReg_1.0.0.tgz(r-4.5-any)
PCLassoReg_1.0.0.tar.gz(r-4.7-any)PCLassoReg_1.0.0.tar.gz(r-4.6-any)
PCLassoReg_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PCLassoReg/json (API)
| # Install 'PCLassoReg' in R: |
| install.packages('PCLassoReg', repos = c('https://weiliu123.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/weiliu123/pclassoreg/issues
Datasets:
- classData - A dataset for classification
- PCGroups - Protein complexes.
- survivalData - A dataset for prognostic model
Last updated from:14b575cc1a. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 172 | ||
| source / vignettes | OK | 190 | ||
| linux-release-x86_64 | NOTE | 170 | ||
| macos-release-arm64 | NOTE | 128 | ||
| macos-oldrel-arm64 | NOTE | 170 | ||
| windows-devel | NOTE | 119 | ||
| windows-release | NOTE | 118 | ||
| windows-oldrel | NOTE | 126 | ||
| wasm-release | OK | 114 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A dataset for classification | classData |
| Cross-validation for 'PCLasso' | cv.PCLasso |
| Cross-validation for 'PCLasso2' | cv.PCLasso2 |
| get protein complexes | getPCGroups |
| Protein complexes. | PCGroups |
| Protein complex-based group lasso-Cox model | PCLasso |
| Protein complex-based group Lasso-logistic model | PCLasso2 |
| Group Regression Models for Risk Protein Complex Identification | PCLassoReg |
| Plot the cross-validation curve from a 'cv.PCLasso' object | plot.cv.PCLasso |
| Plot the cross-validation curve from a 'cv.PCLasso2' object | plot.cv.PCLasso2 |
| Plot coefficients from a PCLasso object | plot.PCLasso |
| Plot coefficients from a PCLasso2 object | plot.PCLasso2 |
| Make predictions from a cross-validated PCLasso model | predict.cv.PCLasso |
| Make predictions from a cross-validated PCLasso2 model | predict.cv.PCLasso2 |
| Make predictions from a PCLasso model | predict.PCLasso |
| Make predictions from a PCLasso2 model | predict.PCLasso2 |
| A dataset for prognostic model | survivalData |
