{ "_id": "6a55f323ff0138dec5d6ad75", "Package": "PCLassoReg", "Title": "Group Regression Models for Risk Protein Complex Identification", "Version": "1.0.0", "Authors@R": "person(\"Wei\", \"Liu\", , \"freelw@qq.com\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-5496-3641\"))", "Description": "Two protein complex-based group regression models (PCLasso\nand PCLasso2) for risk protein complex identification. PCLasso\nis a prognostic model that identifies risk protein complexes\nassociated with survival. PCLasso2 is a classification model\nthat identifies risk protein complexes associated with classes.\nFor more information, see Wang and Liu (2021)\n.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.1.1", "URL": "https://github.com/weiliu123/PCLassoReg", "BugReports": "https://github.com/weiliu123/PCLassoReg/issues", "VignetteBuilder": "knitr", "Repository": "https://weiliu123.r-universe.dev", "Date/Publication": "2021-10-25 11:34:24 UTC", "RemoteUrl": "https://github.com/weiliu123/pclassoreg", "RemoteRef": "HEAD", "RemoteSha": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-14 08:24:36 UTC", "User": "root" }, "Author": "Wei Liu [aut, cre] (ORCID: )", "Maintainer": "Wei Liu ", "_user": "weiliu123", "_type": "src", "_file": "PCLassoReg_1.0.0.tar.gz", "_fileid": "https://r2.ropensci.org/1fd4df1804ea8f2edb585ea3bcbe0e66b7331bb9aeab436e5edacc5abd9aeec2", "_filesize": 1548556, "_sha256": "1fd4df1804ea8f2edb585ea3bcbe0e66b7331bb9aeab436e5edacc5abd9aeec2", "_expires": "2026-10-22T08:28:17.000Z", "_created": "2026-07-14T08:24:36.000Z", "_published": "2026-07-14T08:28:19.032Z", "_jobs": [ { "job": 87036170153, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8304746202" }, { "job": 87036170177, "time": 170, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8304745800" }, { "job": 87036170160, "time": 170, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8304735845" }, { "job": 87036170141, "time": 128, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8304735127" }, { "job": 87035582593, "time": 190, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8304682557" }, { "job": 87036170166, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8304735911" }, { "job": 87036170224, "time": 119, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8304727225" }, { "job": 87036170194, "time": 126, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8304729086" }, { "job": 87036170187, "time": 118, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8304726659" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886", "_status": "success", "_upstream": "https://github.com/weiliu123/pclassoreg", "_commit": { "id": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "author": "weiliu123 <30330590@qq.com>", "committer": "weiliu123 <30330590@qq.com>", "message": "update document\n", "time": 1635161664 }, "_maintainer": { "name": "Wei Liu", "email": "freelw@qq.com", "login": "weiliu123", "description": "", "uuid": 20275072, "orcid": "0000-0002-5496-3641" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "survival", "role": "Imports" }, { "package": "grpreg", "role": "Imports" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "weiliu123", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 2, "_contributors": [ { "user": "weiliu123", "count": 14, "uuid": 20275072 } ], "_userbio": { "uuid": 20275072, "type": "user", "name": "weiliu123", "followers": 1 }, "_downloads": { "count": 258, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PCLassoReg" }, "_devurl": "https://github.com/weiliu123/pclassoreg", "_searchresults": 1, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/PCLassoReg.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/weiliu123/pclassoreg", "_realowner": "weiliu123", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2021-10-26" } ], "_exports": [ "cv.PCLasso", "cv.PCLasso2", "getPCGroups", "PCLasso", "PCLasso2" ], "_datasets": [ { "name": "classData", "title": "A dataset for classification", "object": "classData", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "PCGroups", "title": "Protein complexes.", "object": "PCGroups", "class": [ "data.frame" ], "fields": [ "ComplexID", "ComplexName", "Organism", "UniprotID", "EntrezID", "GeneSymbol" ], "rows": 3512, "table": true, "tojson": true }, { "name": "survivalData", "title": "A dataset for prognostic model", "object": "survivalData", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "classData", "title": "A dataset for classification", "topics": [ "classData" ] }, { "page": "cv.PCLasso", "title": "Cross-validation for 'PCLasso'", "topics": [ "cv.PCLasso" ] }, { "page": "cv.PCLasso2", "title": "Cross-validation for 'PCLasso2'", "topics": [ "cv.PCLasso2" ] }, { "page": "getPCGroups", "title": "get protein complexes", "topics": [ "getPCGroups" ] }, { "page": "PCGroups", "title": "Protein complexes.", "topics": [ "PCGroups" ] }, { "page": "PCLasso", "title": "Protein complex-based group lasso-Cox model", "topics": [ "PCLasso" ] }, { "page": "PCLasso2", "title": "Protein complex-based group Lasso-logistic model", "topics": [ "PCLasso2" ] }, { "page": "PCLassoReg", "title": "Group Regression Models for Risk Protein Complex Identification", "topics": [ "PCLassoReg" ] }, { "page": "plot.cv.PCLasso", "title": "Plot the cross-validation curve from a 'cv.PCLasso' object", "topics": [ "plot.cv.PCLasso" ] }, { "page": "plot.cv.PCLasso2", "title": "Plot the cross-validation curve from a 'cv.PCLasso2' object", "topics": [ "plot.cv.PCLasso2" ] }, { "page": "plot.PCLasso", "title": "Plot coefficients from a PCLasso object", "topics": [ "plot.PCLasso" ] }, { "page": "plot.PCLasso2", "title": "Plot coefficients from a PCLasso2 object", "topics": [ "plot.PCLasso2" ] }, { "page": "predict.cv.PCLasso", "title": "Make predictions from a cross-validated PCLasso model", "topics": [ "predict.cv.PCLasso" ] }, { "page": "predict.cv.PCLasso2", "title": "Make predictions from a cross-validated PCLasso2 model", "topics": [ "predict.cv.PCLasso2" ] }, { "page": "predict.PCLasso", "title": "Make predictions from a PCLasso model", "topics": [ "predict.PCLasso" ] }, { "page": "predict.PCLasso2", "title": "Make predictions from a PCLasso2 model", "topics": [ "predict.PCLasso2" ] }, { "page": "survivalData", "title": "A dataset for prognostic model", "topics": [ "survivalData" ] } ], "_readme": "https://github.com/weiliu123/pclassoreg/raw/HEAD/README.md", "_rundeps": [ "grpreg", "lattice", "Matrix", "survival" ], "_vignettes": [ { "source": "PCLassoReg.Rmd", "filename": "PCLassoReg.html", "title": "An introduction to PCLassoReg", "engine": "knitr::rmarkdown", "headings": [ "1 Introduction", "1.1 PCLasso", "1.2 PCLasso2", "2 Installation", "3 PCLassoReg", "3.1 PCLasso", "3.2 PCLasso2", "3.3 Other penalties", "4 Reference" ], "created": "2021-10-20 01:23:52", "modified": "2021-10-20 01:23:52", "commits": 1 } ], "_score": 4, "_indexed": true, "_nocasepkg": "pclassoreg", "_universes": [ "weiliu123" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.0.0", "date": "2026-07-14T08:27:15.000Z", "distro": "resolute", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/3be1fa8493d5122f208502a52be4e264514961ebbdcea8deeb2f3bcaa2cdece2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.6.1", "os": "linux", "version": "1.0.0", "date": "2026-07-14T08:27:12.000Z", "distro": "resolute", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/38f440ac63dd1c52965129cbce42fa3b8595fc09b9aaedd75e51a1bef8bb4def", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.5.3", "os": "mac", "version": "1.0.0", "date": "2026-07-14T08:26:59.000Z", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/bcf834751871ac190adf2af3db673315b5b8131d0d08425373787e745f265402", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.6.1", "os": "mac", "version": "1.0.0", "date": "2026-07-14T08:26:58.000Z", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/78b4448d6227e3be6a1336f1e6552bb0c0df5ed5b91953529b6f81efee5c54d0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.6.0", "os": "wasm", "version": "1.0.0", "date": "2026-07-14T08:27:23.000Z", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/8a16f068556e894a290de77255170dc740ea74b7d06305a44fe59bd731ea18e5", "status": "success", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.7.0", "os": "win", "version": "1.0.0", "date": "2026-07-14T08:26:14.000Z", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/eb355f60726b69f42c170db21ac2bd64d3b512a821a59950f34ac2e0db4f24b5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.5.3", "os": "win", "version": "1.0.0", "date": "2026-07-14T08:26:27.000Z", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/32f45772d0f0639836d7655fcaedf8b0cc58f0671cec66a547e93b65fdeb61b7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" }, { "r": "4.6.1", "os": "win", "version": "1.0.0", "date": "2026-07-14T08:26:17.000Z", "commit": "14b575cc1ace70bbc4bc7185c6e3b5b2185a22d7", "fileid": "https://r2.ropensci.org/3909002681a158193ae41d2c9ea814bb63953a6a7bbf96b4f3fb038ae9eb8ca5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/weiliu123/actions/runs/29317729886" } ] }